Centrum Diagnostyki Populacyjnej
Grupa Badawcza Wirusologii Ilościowej
Publikacje – 2025
Clinical, histopathological and epidemiological characterisation of rare accessory parotid gland in relation to parotid and submandibular glands: Observations based on 2653 cases of the Polish Salivary Network Database
Wierzbicka, M., P. Gazinska, H.-C. Chen, P. Burduk, E. Bartkowiak, W. Pietruszewska, D. Stodulski, A. Leduchowska, J. Markowski, A. Piernicka-Dybich, M. Wierzchowska, J. Czech, K. Amernik, A. Chańko, D. Majszyk, A. Bruzgielewicz, B. Mikaszewski
Br J Oral Maxillofac Surg
DOI:10.1016/j.bjoms.2024.09.014
Publikacje – 2024
Distinguishable topological properties of functional genome networks in HIV-1 reservoirs
Wiśniewski, J., K. Więcek, H. Ali, K. Pyrc, A. Kula-Pãcurar, M. Wagner, H.-C. Chen
iScience DOI:10.1016/j.isci.2024.111222
Progress and Outlooks in Designing Photonic Biosensor for Virus Detection
Tsalsabila, A., V.A. Dabur, I.J. Budiarso, S. Wustoni, H.-C. Chen, M.D. Birowosuto, A. Wibowo, S. Zeng
Adv Opt Mater. DOI:10.1002/adom.202400849
Publikacje – 2023
POLE3 is a transcriptional repressor of unintegrated linear HIV-1 DNA required for efficient virus integration and escape from innate immune sensing
Thenin-Houssier, S., Machida, S., Jahan, C., Bonnet-Madin, J., Abbou, S., Chen, H.-C., Tesfaye, R., Cuvier, O., and Benkirane, M.
Sci. Adv. DOI:10.1126/sciadv.adh3642
Understanding latent HIV-1 reservoirs through host genomics approaches
Więcek, K., and Chen, H.-C.
iScience DOI:10.1016/j.isci.2023.108342
A systematic review of the barcoding strategy that contributes to COVID-19 diagnostics at a population level
Chen, H.-C.
Front. Mol. Biosci. DOI:10.3389/fmolb.2023.1141534
The Dynamic Linkage between Provirus Integration Sites and the Host Functional Genome Property Alongside HIV-1 Infections Associated with Antiretroviral Therapy
Chen, H.-C.
Vaccines DOI:10.3390/vaccines11020402
Publikacje – 2022
Position matters – a discussion of HIV gene expression
Chen, H.-C.
Science Education Monthly ISSN 1021-3708, 454, P25-32, DOI: 10.6216/SEM
Publikacje – 2021
Spatially clustered loci with multiple enhancers are frequent targets of HIV-1
Lucic, B., H.-C. Chen, M. Kuzman*, E. Zorita*, J. Wegner, V. Minneker, W. Wang, R. Fronza, M. Schmidt, and R. Stadhouders, V. Roukos, K. Vlahovicek, G. Filion and M. Lusic.
Nat. Commun. DOI: 10.1038/s41467-021-26471-w
Publikacje – 2020
The chromatin landscape at the HIV-1 provirus integration site determines viral expression
Vansant, G., H.-C. Chen, E. Zorita, Trejbalová, K., Miklík, D., G. Filion, and Z. Debyser
Nucleic Acids Res. DOI: 10.1093/nar/gkaa536
Exploring histone loading on HIV DNA reveals a dynamic nucleosome positioning between unintegrated and integrated viral genome
Machida, S., D. Depierre, H.-C. Chen, S. Houssier, G. Petitjean, C. Doyen, M. Takaku, O. Cuvier and M. Benkirane
PNAS DOI: 10.1073/pnas.1913754117
Publikacje – 2019
Spatially clustered loci with multiple enhancers are frequent targets of HIV-1
Lucic, B.*, H.-C. Chen*, M. Kuzman*, E. Zorita*, J. Wegner, V. Minneker, W. Wang, R. Fronza, M. Schmidt, and R. Stadhouders, V. Roukos, K. Vlahovicek, G. Filion and M. Lusic
Nat. Commun. DOI: 10.1038/s41467-019-12046-3
Publikacje – 2018
A new quinoline BRD4 inhibitor targets a distinct latent HIV-1 reservoir for re-activation from other ‘shock’ drugs
Abner, E., M. Stoszko, L. Zeng, H.-C. Chen, A. Izquierdo-Bouldstridge, T. Konuma, E. Zorita, E. Fanunza, Q. Zhang, T. Mahmoudi, M.-M. Zhou, G. Filion, and A. Jordan
J Virol. DOI: 10.1128/JVI.02056-17.
Using Barcoded HIV Ensembles (B-HIVE) for single provirus transcriptomics
Chen, H.-C.*, E. Zorita, and G. Filion*
Curr Protoc Mol Biol. DOI: 10.1002/cpmb.56
Publikacje – 2017
Position effects influence HIV latency reversal
Chen, H.-C., J.P. Martinez, E. Zorita, A. Meyerhans, and G. Filion
Nat Struct Mol Biol. DOI: 10.1038/nsmb.3328
Publikacje – 2015
Machine learning: how much does it tell about protein folding rates?
Corrales, M., P. Cusco, D.R. Usmanova, H.-C. Chen, N.S. Bogatyreva, G.J. Filion, and D.N. Ivankov
PLoS One DOI: 10:e0143166
Publikacje – 2008
The two-component system ScnRK of Streptococcus mutans affects hydrogen peroxide resistance and murine macrophage killing
Chen, P.M., H.-C. Chen, C.T. Ho, C.J. Jung, H.T. Lien, J.Y. Chen, and J.S. Chia
Microbes and Infection DOI: 10:293-301